Startups

Cellino is using AI and machine learning to scale production of stem cell therapies

Comment

Burkitt's lymphoma cells. Computer illustration of malignant B-cell lymphocytes seen in Burkitt's lymphoma.
Image Credits: KATERYNA KON/SCIENCE PHOTO LIBRARY / Getty Images

Cellino, a company developing a platform to automate stem cell production, presented today at TechCrunch Disrupt 2021’s Startup Battlefield to detail how its system, which combines AI technology, machine learning, hardware, software — and yes, lasers! — could eventually democratize access to cell therapies. It aims to bring down costs associated with the manufacturing of human cells, while also increasing yields.

Founded by a team whose backgrounds include physics, stem cell biology and machine learning, Cellino operates in the regenerative medicine industry. This space is currently undergoing a revolution, where new developments in gene and cell therapies could lead to breakthrough cures for a number of leading diseases. For example, the use of personalized human retinal cells could be transplanted to halt or reverse age-related macular degeneration, which can cause blindness. But today, such cell therapies are out of reach for most people because the process of cell production hasn’t been automated or made scalable and efficient.

Instead, human cells being used now in these clinical trials are mostly being made by hand by scientists who are looking at cells and evaluating — using their many years of training and expertise — which cells are low quality and need to be removed. They then scrape away those unwanted cells with a pipette tip. The process, as you can imagine, is time-consuming and produces only a small yield. In this manual process, you’d see a yield of about 10% to 20% of cells that would be able to pass the final quality assurance tests required for human transplant.

Cellino is working to improve this process in order to produce more cells of higher quality. Its goal is to push the yield to at least 80% over the next three years.

To do so, Cellino’s system is automating all the human steps in the production process using machine learning techniques.

To identify which cells are high quality or low quality, the company is collecting large training data sets where it’s teaching algorithms to make determinations about cell quality based on a variety of factors. This includes the cell morphology — meaning, the shape, size and density of cells. Fluorescence-based surface markers can also be used to identify other factors of importance to the line of cells being produced, like the location of proteins on the cell, for example.

By using machine learning and AI to do the identification based on standard and well-accepted biological assays used by the FDA, the system could move away from human annotation and the variability that introduces into the process of human cell production.

After Cellino’s software has identified which low-quality cells need to be removed, it then uses a laser to target them. The laser creates large enough cavitation bubbles to kill the cell, but it’s done in a highly localized way where you’re not harming the neighboring cells, as thermal heat does not dissipate to the nearby cells. This is also a more precise technique than the manual method. (Cellino’s system has a 5-micron resolution, while cells are 10-15 microns in size). This results in a throughput of about 5,000 cells per minute, which is highly efficient compared with manual techniques.

Over time, this automation and efficiency could bring the cost down from nearly a million dollars per patient, which is what clinicians have to pay today to run a clinical trial, when outsourcing cell production. Cellino aims to get the cost down into the tens of thousands of dollars over time.

By scaling cell production, personalized cell therapies could also help a broader range of patients compared with other techniques relying on banks of stem cells. These aren’t always genetically diverse samples, leaving smaller ethnic groups out of the progress being made in this space. Banked cells also require recipients to take immunosuppressants, as the cells aren’t your own and the body may reject them.

https://www.youtube.com/watch?v=AvvsZFO0KJE

The use of lasers is an idea developed by Cellino co-founder and CEO Nabiha Saklayen, who patented an invention in cellular laser editing while at Harvard earning her PhD in Physics. She was encouraged to turn the technology into a startup by her collaborators, who included had leading biologists like George Church and David Scadden.

“Not all scientists become entrepreneurs, and I became an entrepreneur because I had an amazing support network around me,” notes Saklayen, of the push to join the startup space. She immediately recruited Marinna Madrid, an applied physicist she had worked with for years on the co-invention of laser-based intracellular delivery techniques, as her other co-founder. To gain more mentorship about growing a startup, Saklayen turned to the Boston area startup ecosystem.

“I didn’t know anything about startups. I wanted to work with people who knew how to build companies, how to commercialize technology, how to build instruments —  and the Boston ecosystem is fantastic in that way. So I started connecting with lots of people in those early weeks — anybody that was in the biotech realm or Harvard Business School,” Saklayen explains.

This led her to Cellino co-founder and CTO Mattias Wagner, who had built companies before in the optics and instrumentation space.

“That’s how the founding team came together. It was very complementary because Marina and I were co-inventors of the original technology that inspired the platform and Mattias brought this tremendous background in semiconductors and optical instrumentation,” says Saklayen.

Since its 2017 founding, Cellino has gone on to raise $16 million in seed funding in a round co-led by The Engine and Khosla Ventures, with participation from Humboldt Fund and 8VC.

The company is now collaborating with the NIH on compatibility studies. Currently, that means Cellino is making stem cells on its system which it’s then comparing with the ones made at the NIH that are already being tested in humans for personalized cell therapies for retinal diseases. Cellino later hopes to use its system to address areas like Parkinson’s, muscle disorders and skin grafts, among others.

The company wanted to present at TechCrunch Disrupt to share more about what it’s building and to source new talent.

“For me, it’s about talking about this idea around democratization and industrialization of cell therapies. I really want to get that message out because that is the movement we need to drive over the next decade for all of these cell therapies to be accessible to all patients,” says Saklayen.

“Cellino’s angle is also very unique in the sense that, because we have this automated system to manufacture human cells, our system could make cells for every human being — in this country, in the world,” she continues. “And there are a lot of cell therapy approaches that are looking to use off-the-shelf cells and off-the-shelf therapies, which will only work for certain parts of the population. As the U.S. becomes more diverse, ethnically, we need personalized solutions for everybody.”

More TechCrunch

Here are quick hits of the biggest news from the keynote as they are announced.

Google I/O 2024: Here’s everything Google just announced

The AI industry moves faster than the rest of the technology sector, which means it outpaces the federal government by several orders of magnitude.

Senate study proposes ‘at least’ $32B yearly for AI programs

The FBI along with a coalition of international law enforcement agencies seized the notorious cybercrime forum BreachForums on Wednesday.  For years, BreachForums has been a popular English-language forum for hackers…

FBI seizes hacking forum BreachForums — again

The announcement signifies a significant shake-up in the streaming giant’s advertising approach.

Netflix to take on Google and Amazon by building its own ad server

It’s tough to say that a $100 billion business finds itself at a critical juncture, but that’s the case with Amazon Web Services, the cloud arm of Amazon, and the…

Matt Garman taking over as CEO with AWS at crossroads

Back in February, Google paused its AI-powered chatbot Gemini’s ability to generate images of people after users complained of historical inaccuracies. Told to depict “a Roman legion,” for example, Gemini would show…

Google still hasn’t fixed Gemini’s biased image generator

A feature Google demoed at its I/O confab yesterday, using its generative AI technology to scan voice calls in real time for conversational patterns associated with financial scams, has sent…

Google’s call-scanning AI could dial up censorship by default, privacy experts warn

Google’s going all in on AI — and it wants you to know it. During the company’s keynote at its I/O developer conference on Tuesday, Google mentioned “AI” more than…

The top AI announcements from Google I/O

Uber is taking a shuttle product it developed for commuters in India and Egypt and converting it for an American audience. The ride-hail and delivery giant announced Wednesday at its…

Uber has a new way to solve the concert traffic problem

Google is preparing to launch a new system to help address the problem of malware on Android. Its new live threat detection service leverages Google Play Protect’s on-device AI to…

Google takes aim at Android malware with an AI-powered live threat detection service

Users will be able to access the AR content by first searching for a location in Google Maps.

Google Maps is getting geospatial AR content later this year

The heat pump startup unveiled its first products and revealed details about performance, pricing and availability.

Quilt heat pump sports sleek design from veterans of Apple, Tesla and Nest

The space is available from the launcher and can be locked as a second layer of authentication.

Google’s new Private Space feature is like Incognito Mode for Android

Gemini, the company’s family of generative AI models, will enhance the smart TV operating system so it can generate descriptions for movies and TV shows.

Google TV to launch AI-generated movie descriptions

When triggered, the AI-powered feature will automatically lock the device down.

Android’s new Theft Detection Lock helps deter smartphone snatch and grabs

The company said it is increasing the on-device capability of its Google Play Protect system to detect fraudulent apps trying to breach sensitive permissions.

Google adds live threat detection and screen-sharing protection to Android

This latest release, one of many announcements from the Google I/O 2024 developer conference, focuses on improved battery life and other performance improvements, like more efficient workout tracking.

Wear OS 5 hits developer preview, offering better battery life

For years, Sammy Faycurry has been hearing from his registered dietitian (RD) mom and sister about how poorly many Americans eat and their struggles with delivering nutritional counseling. Although nearly…

Dietitian startup Fay has been booming from Ozempic patients and emerges from stealth with $25M from General Catalyst, Forerunner

Apple is bringing new accessibility features to iPads and iPhones, designed to cater to a diverse range of user needs.

Apple announces new accessibility features for iPhone and iPad users

TechCrunch Disrupt, our flagship startup event held annually in San Francisco, is back on October 28-30 — and you can expect a bustling crowd of thousands of startup enthusiasts. Exciting…

Startup Blueprint: TC Disrupt 2024 Builders Stage agenda sneak peek!

Mike Krieger, one of the co-founders of Instagram and, more recently, the co-founder of personalized news app Artifact (which TechCrunch corporate parent Yahoo recently acquired), is joining Anthropic as the…

Anthropic hires Instagram co-founder as head of product

Seven orgs so far have signed on to standardize the way data is collected and shared.

Venture orgs form alliance to standardize data collection

As cloud adoption continues to surge toward the $1 trillion mark in annual spend, we’re seeing a wave of enterprise startups gaining traction with customers and investors for tools to…

Alkira connects with $100M for a solution that connects your clouds

Charging has long been the Achilles’ heel of electric vehicles. One startup thinks it has a better way for apartment dwelling EV drivers to charge overnight.

Orange Charger thinks a $750 outlet will solve EV charging for apartment dwellers

So did investors laugh them out of the room when they explained how they wanted to replace Quickbooks? Kind of.

Embedded accounting startup Layer secures $2.3M toward goal of replacing QuickBooks

While an increasing number of companies are investing in AI, many are struggling to get AI-powered projects into production — much less delivering meaningful ROI. The challenges are many. But…

Weka raises $140M as the AI boom bolsters data platforms

PayHOA, a previously bootstrapped Kentucky-based startup that offers software for self-managed homeowner associations (HOAs), is an example of how real-world problems can translate into opportunity. It just raised a $27.5…

Meet PayHOA, a profitable and once-bootstrapped SaaS startup that just landed a $27.5M Series A

Restaurant365, which offers a restaurant management suite, has raised a hot $175M from ICONIQ Growth, KKR and L Catterton.

Restaurant365 orders in $175M at $1B+ valuation to supersize its food service software stack 

Venture firm Shilling has launched a €50M fund to support growth-stage startups in its own portfolio and to invest in startups everywhere else. 

Portuguese VC firm Shilling launches €50M opportunity fund to back growth-stage startups

Chang She, previously the VP of engineering at Tubi and a Cloudera veteran, has years of experience building data tooling and infrastructure. But when She began working in the AI…

LanceDB, which counts Midjourney as a customer, is building databases for multimodal AI